// Copyright 2004 The Trustees of Indiana University. // Distributed under the Boost Software License, Version 1.0. // (See accompanying file LICENSE_1_0.txt or copy at // http://www.boost.org/LICENSE_1_0.txt) // Authors: Jeremiah Willcock // Douglas Gregor // Andrew Lumsdaine #ifndef BOOST_GRAPH_GURSOY_ATUN_LAYOUT_HPP #define BOOST_GRAPH_GURSOY_ATUN_LAYOUT_HPP // Gursoy-Atun graph layout, based on: // "Neighbourhood Preserving Load Balancing: A Self-Organizing Approach" // in EuroPar 2000, p. 234 of LNCS 1900 // http://springerlink.metapress.com/link.asp?id=pcu07ew5rhexp9yt #include <boost/config/no_tr1/cmath.hpp> #include <boost/throw_exception.hpp> #include <boost/assert.hpp> #include <vector> #include <exception> #include <algorithm> #include <boost/graph/visitors.hpp> #include <boost/graph/properties.hpp> #include <boost/random/uniform_01.hpp> #include <boost/random/linear_congruential.hpp> #include <boost/shared_ptr.hpp> #include <boost/graph/breadth_first_search.hpp> #include <boost/graph/dijkstra_shortest_paths.hpp> #include <boost/graph/named_function_params.hpp> #include <boost/graph/topology.hpp> namespace boost { namespace detail { struct over_distance_limit : public std::exception {}; template <typename PositionMap, typename NodeDistanceMap, typename Topology, typename Graph> struct update_position_visitor { typedef typename Topology::point_type Point; PositionMap position_map; NodeDistanceMap node_distance; const Topology& space; Point input_vector; double distance_limit; double learning_constant; double falloff_ratio; typedef boost::on_examine_vertex event_filter; typedef typename graph_traits<Graph>::vertex_descriptor vertex_descriptor; update_position_visitor(PositionMap position_map, NodeDistanceMap node_distance, const Topology& space, const Point& input_vector, double distance_limit, double learning_constant, double falloff_ratio): position_map(position_map), node_distance(node_distance), space(space), input_vector(input_vector), distance_limit(distance_limit), learning_constant(learning_constant), falloff_ratio(falloff_ratio) {} void operator()(vertex_descriptor v, const Graph&) const { #ifndef BOOST_NO_STDC_NAMESPACE using std::pow; #endif if (get(node_distance, v) > distance_limit) BOOST_THROW_EXCEPTION(over_distance_limit()); Point old_position = get(position_map, v); double distance = get(node_distance, v); double fraction = learning_constant * pow(falloff_ratio, distance * distance); put(position_map, v, space.move_position_toward(old_position, fraction, input_vector)); } }; template<typename EdgeWeightMap> struct gursoy_shortest { template<typename Graph, typename NodeDistanceMap, typename UpdatePosition> static inline void run(const Graph& g, typename graph_traits<Graph>::vertex_descriptor s, NodeDistanceMap node_distance, UpdatePosition& update_position, EdgeWeightMap weight) { boost::dijkstra_shortest_paths(g, s, weight_map(weight). visitor(boost::make_dijkstra_visitor(std::make_pair( boost::record_distances(node_distance, boost::on_edge_relaxed()), update_position)))); } }; template<> struct gursoy_shortest<dummy_property_map> { template<typename Graph, typename NodeDistanceMap, typename UpdatePosition> static inline void run(const Graph& g, typename graph_traits<Graph>::vertex_descriptor s, NodeDistanceMap node_distance, UpdatePosition& update_position, dummy_property_map) { boost::breadth_first_search(g, s, visitor(boost::make_bfs_visitor(std::make_pair( boost::record_distances(node_distance, boost::on_tree_edge()), update_position)))); } }; } // namespace detail template <typename VertexListAndIncidenceGraph, typename Topology, typename PositionMap, typename Diameter, typename VertexIndexMap, typename EdgeWeightMap> void gursoy_atun_step (const VertexListAndIncidenceGraph& graph, const Topology& space, PositionMap position, Diameter diameter, double learning_constant, VertexIndexMap vertex_index_map, EdgeWeightMap weight) { #ifndef BOOST_NO_STDC_NAMESPACE using std::pow; using std::exp; #endif typedef typename graph_traits<VertexListAndIncidenceGraph>::vertex_iterator vertex_iterator; typedef typename graph_traits<VertexListAndIncidenceGraph>::vertex_descriptor vertex_descriptor; typedef typename Topology::point_type point_type; vertex_iterator i, iend; std::vector<double> distance_from_input_vector(num_vertices(graph)); typedef boost::iterator_property_map<std::vector<double>::iterator, VertexIndexMap, double, double&> DistanceFromInputMap; DistanceFromInputMap distance_from_input(distance_from_input_vector.begin(), vertex_index_map); std::vector<double> node_distance_map_vector(num_vertices(graph)); typedef boost::iterator_property_map<std::vector<double>::iterator, VertexIndexMap, double, double&> NodeDistanceMap; NodeDistanceMap node_distance(node_distance_map_vector.begin(), vertex_index_map); point_type input_vector = space.random_point(); vertex_descriptor min_distance_loc = graph_traits<VertexListAndIncidenceGraph>::null_vertex(); double min_distance = 0.0; bool min_distance_unset = true; for (boost::tie(i, iend) = vertices(graph); i != iend; ++i) { double this_distance = space.distance(get(position, *i), input_vector); put(distance_from_input, *i, this_distance); if (min_distance_unset || this_distance < min_distance) { min_distance = this_distance; min_distance_loc = *i; } min_distance_unset = false; } BOOST_ASSERT (!min_distance_unset); // Graph must have at least one vertex boost::detail::update_position_visitor< PositionMap, NodeDistanceMap, Topology, VertexListAndIncidenceGraph> update_position(position, node_distance, space, input_vector, diameter, learning_constant, exp(-1. / (2 * diameter * diameter))); std::fill(node_distance_map_vector.begin(), node_distance_map_vector.end(), 0); try { typedef detail::gursoy_shortest<EdgeWeightMap> shortest; shortest::run(graph, min_distance_loc, node_distance, update_position, weight); } catch (detail::over_distance_limit) { /* Thrown to break out of BFS or Dijkstra early */ } } template <typename VertexListAndIncidenceGraph, typename Topology, typename PositionMap, typename VertexIndexMap, typename EdgeWeightMap> void gursoy_atun_refine(const VertexListAndIncidenceGraph& graph, const Topology& space, PositionMap position, int nsteps, double diameter_initial, double diameter_final, double learning_constant_initial, double learning_constant_final, VertexIndexMap vertex_index_map, EdgeWeightMap weight) { #ifndef BOOST_NO_STDC_NAMESPACE using std::pow; using std::exp; #endif typedef typename graph_traits<VertexListAndIncidenceGraph>::vertex_iterator vertex_iterator; vertex_iterator i, iend; double diameter_ratio = (double)diameter_final / diameter_initial; double learning_constant_ratio = learning_constant_final / learning_constant_initial; std::vector<double> distance_from_input_vector(num_vertices(graph)); typedef boost::iterator_property_map<std::vector<double>::iterator, VertexIndexMap, double, double&> DistanceFromInputMap; DistanceFromInputMap distance_from_input(distance_from_input_vector.begin(), vertex_index_map); std::vector<int> node_distance_map_vector(num_vertices(graph)); typedef boost::iterator_property_map<std::vector<int>::iterator, VertexIndexMap, double, double&> NodeDistanceMap; NodeDistanceMap node_distance(node_distance_map_vector.begin(), vertex_index_map); for (int round = 0; round < nsteps; ++round) { double part_done = (double)round / (nsteps - 1); // fprintf(stderr, "%2d%% done\n", int(rint(part_done * 100.))); int diameter = (int)(diameter_initial * pow(diameter_ratio, part_done)); double learning_constant = learning_constant_initial * pow(learning_constant_ratio, part_done); gursoy_atun_step(graph, space, position, diameter, learning_constant, vertex_index_map, weight); } } template <typename VertexListAndIncidenceGraph, typename Topology, typename PositionMap, typename VertexIndexMap, typename EdgeWeightMap> void gursoy_atun_layout(const VertexListAndIncidenceGraph& graph, const Topology& space, PositionMap position, int nsteps, double diameter_initial, double diameter_final, double learning_constant_initial, double learning_constant_final, VertexIndexMap vertex_index_map, EdgeWeightMap weight) { typedef typename graph_traits<VertexListAndIncidenceGraph>::vertex_iterator vertex_iterator; vertex_iterator i, iend; for (boost::tie(i, iend) = vertices(graph); i != iend; ++i) { put(position, *i, space.random_point()); } gursoy_atun_refine(graph, space, position, nsteps, diameter_initial, diameter_final, learning_constant_initial, learning_constant_final, vertex_index_map, weight); } template <typename VertexListAndIncidenceGraph, typename Topology, typename PositionMap, typename VertexIndexMap> void gursoy_atun_layout(const VertexListAndIncidenceGraph& graph, const Topology& space, PositionMap position, int nsteps, double diameter_initial, double diameter_final, double learning_constant_initial, double learning_constant_final, VertexIndexMap vertex_index_map) { gursoy_atun_layout(graph, space, position, nsteps, diameter_initial, diameter_final, learning_constant_initial, learning_constant_final, vertex_index_map, dummy_property_map()); } template <typename VertexListAndIncidenceGraph, typename Topology, typename PositionMap> void gursoy_atun_layout(const VertexListAndIncidenceGraph& graph, const Topology& space, PositionMap position, int nsteps, double diameter_initial, double diameter_final = 1.0, double learning_constant_initial = 0.8, double learning_constant_final = 0.2) { gursoy_atun_layout(graph, space, position, nsteps, diameter_initial, diameter_final, learning_constant_initial, learning_constant_final, get(vertex_index, graph)); } template <typename VertexListAndIncidenceGraph, typename Topology, typename PositionMap> void gursoy_atun_layout(const VertexListAndIncidenceGraph& graph, const Topology& space, PositionMap position, int nsteps) { #ifndef BOOST_NO_STDC_NAMESPACE using std::sqrt; #endif gursoy_atun_layout(graph, space, position, nsteps, sqrt((double)num_vertices(graph))); } template <typename VertexListAndIncidenceGraph, typename Topology, typename PositionMap> void gursoy_atun_layout(const VertexListAndIncidenceGraph& graph, const Topology& space, PositionMap position) { gursoy_atun_layout(graph, space, position, num_vertices(graph)); } template<typename VertexListAndIncidenceGraph, typename Topology, typename PositionMap, typename P, typename T, typename R> void gursoy_atun_layout(const VertexListAndIncidenceGraph& graph, const Topology& space, PositionMap position, const bgl_named_params<P,T,R>& params) { #ifndef BOOST_NO_STDC_NAMESPACE using std::sqrt; #endif std::pair<double, double> diam(sqrt(double(num_vertices(graph))), 1.0); std::pair<double, double> learn(0.8, 0.2); gursoy_atun_layout(graph, space, position, choose_param(get_param(params, iterations_t()), num_vertices(graph)), choose_param(get_param(params, diameter_range_t()), diam).first, choose_param(get_param(params, diameter_range_t()), diam).second, choose_param(get_param(params, learning_constant_range_t()), learn).first, choose_param(get_param(params, learning_constant_range_t()), learn).second, choose_const_pmap(get_param(params, vertex_index), graph, vertex_index), choose_param(get_param(params, edge_weight), dummy_property_map())); } } // namespace boost #endif // BOOST_GRAPH_GURSOY_ATUN_LAYOUT_HPP